1 HAMP#1
97-167 aa · 71 aa · 18.2% of protein
Raw token
HAMP:97:0.000000000738:167:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS04245
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeClassicLength390 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS04245Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length390 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 390 aa (63.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa390 aa
Domain-by-domain annotation3 items
2 HisKA#2
172-238 aa · 67 aa · 17.2% of protein
Raw token
HisKA:172:0.0000000000272:238:67:643 HATPase_c#3
280-388 aa · 109 aa · 27.9% of protein
Raw token
HATPase_c:280:2.37e-33:388:109:109- Raw architecture: HAMP:97:0.000000000738:167:71:69#HisKA:172:0.0000000000272:238:67:64#HATPase_c:280:2.37e-33:388:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000003.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7432-9248Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_04255RefSeq proteinWP_173815463.1
Context group ID
GCF_020538965::NZ_JAJBPK010000003.1::G00039Context members
LIQ80_RS04245LIQ80_RS04250
Partner locus tags
LIQ80_RS04245LIQ80_RS04250
Partner old locus tags
LIQ80_04255LIQ80_04260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815463.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS04245Primary locus identifier stored in the genes table.
Old locus tagLIQ80_04255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000003.1Sequence record reported by the local genomic context database.
Genomic interval7 432-8 604 nt1 173 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 432-9 248 ntGCF_020538965::NZ_JAJBPK010000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000003.1All displayed genes belong to this local TCS context.
Neighborhood span7 432-9 248 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 432 nt9 248 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS04245GCF_020538965#LIQ80_RS04245
HKClassicCurrent focus
7 432-8 604 nt · Reverse (-)
LIQ80_RS04250GCF_020538965#LIQ80_RS04250
RROmpR
8 601-9 248 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS04260Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2529544
Simplified PFAM architecture for HKOC_2529544
PFAM domain coverage: 172 / 390 aa (44.1%)
1 aa390 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-237] | HATPase_c[283-388]
- Domain count: 2
- Matched identifier: HKOC_2529544
- Positioned domains: HisKA 172-237 ; HATPase_c 283-388
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS04260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key