1 Response_reg#1
6-121 aa · 116 aa · 43.6% of protein
Raw token
Response_reg:6:3.93e-20:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS02890
Response regulator Spo0A family
Fusicatenibacter saccharivorans · GCF_020538965
ClassRRTypeSpo0ALength266 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538965#LIQ80_RS02890Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length266 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 266 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa266 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
156-259 aa · 104 aa · 39.1% of protein
Raw token
Spo0A_C:156:5.01e-64:259:104:104- Raw architecture: Response_reg:6:3.93e-20:121:116:111#Spo0A_C:156:5.01e-64:259:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538965::NZ_JAJBPK010000002.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span54120-54920Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_02890RefSeq proteinWP_055218233.1
Context group ID
GCF_020538965::NZ_JAJBPK010000002.1::G00029Context members
LIQ80_RS02890
Partner locus tags
LIQ80_RS02890
Partner old locus tags
LIQ80_02890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055218233.1Primary protein accession used for annex mappings.
UniProt accessionA0A174I1K6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174I1K6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS02890Primary locus identifier stored in the genes table.
Old locus tagLIQ80_02890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000002.1Sequence record reported by the local genomic context database.
Genomic interval54 120-54 920 nt801 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 120-54 920 ntGCF_020538965::NZ_JAJBPK010000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000002.1All displayed genes belong to this local TCS context.
Neighborhood span54 120-54 920 nt801 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 120 nt54 920 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ80_RS02890GCF_020538965#LIQ80_RS02890
RRSpo0ACurrent focus
54 120-54 920 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS14090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0626890
Simplified PFAM architecture for RROC_0626890
PFAM domain coverage: 220 / 266 aa (82.7%)
1 aa266 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[156-259]
- Domain count: 2
- Matched identifier: RROC_0626890
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 156-259 ; Spo0A_C 156-259
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS14090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key