1 Response_reg#1
10-118 aa · 109 aa · 47.0% of protein
Raw token
Response_reg:10:1.29e-30:118:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS02450
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_020538965
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538965#LIQ80_RS02450Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:154:1.73e-29:230:77:77- Raw architecture: Response_reg:10:1.29e-30:118:110:111#Trans_reg_C:154:1.73e-29:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538965::NZ_JAJBPK010000001.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span474786-475484Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_02450RefSeq proteinWP_004064254.1
Context group ID
GCF_020538965::NZ_JAJBPK010000001.1::G00008Context members
LIQ80_RS02450
Partner locus tags
LIQ80_RS02450
Partner old locus tags
LIQ80_02450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004064254.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3I5D1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3I5D1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS02450Primary locus identifier stored in the genes table.
Old locus tagLIQ80_02450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000001.1Sequence record reported by the local genomic context database.
Genomic interval474 786-475 484 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span474 786-475 484 ntGCF_020538965::NZ_JAJBPK010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span474 786-475 484 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
474 786 nt475 484 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ80_RS02450GCF_020538965#LIQ80_RS02450
RROmpRCurrent focus
474 786-475 484 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS29720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129359
Simplified PFAM architecture for RROC_1129359
PFAM domain coverage: 184 / 232 aa (79.3%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-117] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1129359
- Positioned domains: Response_reg 10-117 ; Response_reg 10-117 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS29720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key