1 His_kinase#1
376-453 aa · 78 aa · 13.4% of protein
Raw token
His_kinase:376:1.27e-26:453:78:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS00660
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeClassicLength584 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538965#LIQ80_RS00660Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length584 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 584 aa (32.5%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa584 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
473-584 aa · 112 aa · 19.2% of protein
Raw token
HATPase_c:473:0.000000895:584:115:109- Raw architecture: His_kinase:376:1.27e-26:453:78:80#HATPase_c:473:0.000000895:584:115:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538965::NZ_JAJBPK010000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span131114-132868Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_00660RefSeq proteinWP_117802088.1
Context group ID
GCF_020538965::NZ_JAJBPK010000001.1::G00003Context members
LIQ80_RS00660
Partner locus tags
LIQ80_RS00660
Partner old locus tags
LIQ80_00660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117802088.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS00660Primary locus identifier stored in the genes table.
Old locus tagLIQ80_00660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000001.1Sequence record reported by the local genomic context database.
Genomic interval131 114-132 868 nt1 755 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span131 114-132 868 ntGCF_020538965::NZ_JAJBPK010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span131 114-132 868 nt1 755 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 114 nt132 868 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ80_RS00660GCF_020538965#LIQ80_RS00660
HKClassicCurrent focus
131 114-132 868 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460955#DWY63_RS10925Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1143283
Simplified PFAM architecture for HKOC_1143283
PFAM domain coverage: 188 / 584 aa (32.2%)
1 aa584 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[376-454] | HATPase_c[475-583]
- Domain count: 2
- Matched identifier: HKOC_1143283
- Positioned domains: His_kinase 376-454 ; HATPase_c 475-583
Cluster members and taxonomy
Representative gene: GCF_003460955#DWY63_RS10925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key