1 sCache_like#1
69-139 aa · 71 aa · 12.9% of protein
Raw token
sCache_like:69:0.00000436:139:75:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS00560
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeClassicLength552 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS00560Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
sCache_likePAS_4HisKAHATPase_c
Protein length552 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage335 / 552 aa (60.7%)Merged over positioned domains only.
Domain description1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa552 aa
Domain-by-domain annotation4 items
2 PAS_4#2
235-326 aa · 92 aa · 16.7% of protein
Raw token
PAS_4:235:0.00000369:326:102:1103 HisKA#3
333-399 aa · 67 aa · 12.1% of protein
Raw token
HisKA:333:1.47e-16:399:67:644 HATPase_c#4
448-552 aa · 105 aa · 19.0% of protein
Raw token
HATPase_c:448:6.98e-28:552:105:109- Raw architecture: sCache_like:69:0.00000436:139:75:114#PAS_4:235:0.00000369:326:102:110#HisKA:333:1.47e-16:399:67:64#HATPase_c:448:6.98e-28:552:105:109
- Domain description: 1 sCache_like,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104322-106661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_00560RefSeq proteinWP_118719240.1
Context group ID
GCF_020538965::NZ_JAJBPK010000001.1::G00001Context members
LIQ80_RS00555LIQ80_RS00560
Partner locus tags
LIQ80_RS00555LIQ80_RS00560
Partner old locus tags
LIQ80_00555LIQ80_00560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118719240.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS00560Primary locus identifier stored in the genes table.
Old locus tagLIQ80_00560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000001.1Sequence record reported by the local genomic context database.
Genomic interval105 003-106 661 nt1 659 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span104 322-106 661 ntGCF_020538965::NZ_JAJBPK010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span104 322-106 661 nt2 340 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 322 nt106 661 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS00555GCF_020538965#LIQ80_RS00555
RROmpR
104 322-104 993 nt · Forward (+)
LIQ80_RS00560GCF_020538965#LIQ80_RS00560
HKClassicCurrent focus
105 003-106 661 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS03440Use this link to inspect the representative gene detail.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1287347
Simplified PFAM architecture for HKOC_1287347
PFAM domain coverage: 256 / 552 aa (46.4%)
1 aa552 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[225-308] | HisKA[333-398] | HATPase_c[446-551]
- Domain count: 3
- Matched identifier: HKOC_1287347
- Positioned domains: PAS 225-308 ; HisKA 333-398 ; HATPase_c 446-551
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS03440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key