1 HAMP#1
154-222 aa · 69 aa · 14.9% of protein
Raw token
HAMP:154:0.0000000000000552:222:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ83_RS02225
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020538945
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538945#LIQ83_RS02225Stable P2CS identifier used across views.
GenomeGCF_020538945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 463 aa (53.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
229-294 aa · 66 aa · 14.3% of protein
Raw token
HisKA:229:0.00000000000000352:294:66:643 HATPase_c#3
340-450 aa · 111 aa · 24.0% of protein
Raw token
HATPase_c:340:3.67e-34:450:111:109- Raw architecture: HAMP:154:0.0000000000000552:222:69:69#HisKA:229:0.00000000000000352:294:66:64#HATPase_c:340:3.67e-34:450:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538945::NZ_JAJBPI010000002.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span152563-154622Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ83_02230RefSeq proteinWP_003538210.1
Context group ID
GCF_020538945::NZ_JAJBPI010000002.1::G00013Context members
LIQ83_RS02220LIQ83_RS02225
Partner locus tags
LIQ83_RS02220LIQ83_RS02225
Partner old locus tags
LIQ83_02225LIQ83_02230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003538210.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3AH31Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3AH31_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ83_RS02225Primary locus identifier stored in the genes table.
Old locus tagLIQ83_02230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPI010000002.1Sequence record reported by the local genomic context database.
Genomic interval153 231-154 622 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span152 563-154 622 ntGCF_020538945::NZ_JAJBPI010000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538945::NZ_JAJBPI010000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span152 563-154 622 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 563 nt154 622 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ83_RS02220GCF_020538945#LIQ83_RS02220
RROmpR
152 563-153 234 nt · Forward (+)
LIQ83_RS02225GCF_020538945#LIQ83_RS02225
HKClassicCurrent focus
153 231-154 622 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS11605Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1795419
Simplified PFAM architecture for HKOC_1795419
PFAM domain coverage: 223 / 463 aa (48.2%)
1 aa463 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[174-222] | HisKA[229-292] | HATPase_c[340-449]
- Domain count: 3
- Matched identifier: HKOC_1795419
- Positioned domains: HAMP 174-222 ; HisKA 229-292 ; HATPase_c 340-449
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS11605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020538945
AssemblyASM2053894v1 · Contighaploid
Genome composition3 878 119 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key