1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:3.44e-31:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ79_RS04575
Response regulator OmpR family
Thomasclavelia ramosa · GCF_020538925
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538925#LIQ79_RS04575Stable P2CS identifier used across views.
GenomeGCF_020538925Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 219 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.9% of protein
Raw token
Trans_reg_C:147:9.44e-24:218:74:77- Raw architecture: Response_reg:4:3.44e-31:112:112:111#Trans_reg_C:147:9.44e-24:218:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538925::NZ_JAJBPG010000012.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22560-24571Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ79_04575RefSeq proteinWP_117791812.1
Context group ID
GCF_020538925::NZ_JAJBPG010000012.1::G00004Context members
LIQ79_RS04570LIQ79_RS04575
Partner locus tags
LIQ79_RS04570LIQ79_RS04575
Partner old locus tags
LIQ79_04570LIQ79_04575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117791812.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ79_RS04575Primary locus identifier stored in the genes table.
Old locus tagLIQ79_04575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPG010000012.1Sequence record reported by the local genomic context database.
Genomic interval23 912-24 571 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 560-24 571 ntGCF_020538925::NZ_JAJBPG010000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538925::NZ_JAJBPG010000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPG010000012.1All displayed genes belong to this local TCS context.
Neighborhood span22 560-24 571 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 560 nt24 571 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ79_RS04570GCF_020538925#LIQ79_RS04570
HKClassic
22 560-23 921 nt · Reverse (-)
LIQ79_RS04575GCF_020538925#LIQ79_RS04575
RROmpRCurrent focus
23 912-24 571 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003459445#DWX69_RS01590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1777276
Simplified PFAM architecture for RROC_1777276
PFAM domain coverage: 180 / 219 aa (82.2%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-217]
- Domain count: 2
- Matched identifier: RROC_1777276
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-217 ; Trans_reg_C 147-217
Cluster members and taxonomy
Representative gene: GCF_003459445#DWX69_RS01590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020538925
AssemblyASM2053892v1 · Contighaploid
Genome composition3 810 338 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 51 · HK 23 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key