1 HisKA#1
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.00000000000000613:298:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ15_RS03920
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020538465
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538465#LIQ15_RS03920Stable P2CS identifier used across views.
GenomeGCF_020538465Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 453 aa (38.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-453 aa · 111 aa · 24.5% of protein
Raw token
HATPase_c:343:3.5e-21:453:111:109- Raw architecture: HisKA:234:0.00000000000000613:298:65:64#HATPase_c:343:3.5e-21:453:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538465::NZ_JAJBOL010000003.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159205-161216Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ15_03920RefSeq proteinWP_217751459.1
Context group ID
GCF_020538465::NZ_JAJBOL010000003.1::G00021Context members
LIQ15_RS03920LIQ15_RS03925
Partner locus tags
LIQ15_RS03920LIQ15_RS03925
Partner old locus tags
LIQ15_03920LIQ15_03925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217751459.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ15_RS03920Primary locus identifier stored in the genes table.
Old locus tagLIQ15_03920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBOL010000003.1Sequence record reported by the local genomic context database.
Genomic interval159 205-160 566 nt1 362 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span159 205-161 216 ntGCF_020538465::NZ_JAJBOL010000003.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538465::NZ_JAJBOL010000003.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBOL010000003.1All displayed genes belong to this local TCS context.
Neighborhood span159 205-161 216 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 205 nt161 216 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ15_RS03920GCF_020538465#LIQ15_RS03920
HKClassicCurrent focus
159 205-160 566 nt · Reverse (-)
LIQ15_RS03925GCF_020538465#LIQ15_RS03925
RROmpR
160 557-161 216 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019125455#KSU60_RS08280Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1930705
Simplified PFAM architecture for HKOC_1930705
PFAM domain coverage: 176 / 453 aa (38.9%)
1 aa453 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-298] | HATPase_c[343-453]
- Domain count: 2
- Matched identifier: HKOC_1930705
- Positioned domains: HisKA 234-298 ; HATPase_c 343-453
Cluster members and taxonomy
Representative gene: GCF_019125455#KSU60_RS08280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020538465
AssemblyASM2053846v1 · Contighaploid
Genome composition3 790 356 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key