1 HAMP#1
156-225 aa · 70 aa · 15.8% of protein
Raw token
HAMP:156:0.00000122:225:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP60_RS19080
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020537585
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537585#LIP60_RS19080Stable P2CS identifier used across views.
GenomeGCF_020537585Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 442 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
239-297 aa · 59 aa · 13.3% of protein
Raw token
HisKA:239:0.00000000144:297:59:643 HATPase_c#3
348-440 aa · 93 aa · 21.0% of protein
Raw token
HATPase_c:348:0.00000576:440:110:109- Raw architecture: HAMP:156:0.00000122:225:70:69#HisKA:239:0.00000000144:297:59:64#HATPase_c:348:0.00000576:440:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537585::NZ_JAJBMT010000013.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19471-21493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP60_07565RefSeq proteinWP_003535084.1
Context group ID
GCF_020537585::NZ_JAJBMT010000013.1::G00007Context members
LIP60_RS07560LIP60_RS19080
Partner locus tags
LIP60_RS07560LIP60_RS19080
Partner old locus tags
LIP60_07560LIP60_07565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535084.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q2X2X4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q2X2X4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP60_RS19080Primary locus identifier stored in the genes table.
Old locus tagLIP60_07565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMT010000013.1Sequence record reported by the local genomic context database.
Genomic interval20 165-21 493 nt1 329 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 471-21 493 ntGCF_020537585::NZ_JAJBMT010000013.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537585::NZ_JAJBMT010000013.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMT010000013.1All displayed genes belong to this local TCS context.
Neighborhood span19 471-21 493 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 471 nt21 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP60_RS07560GCF_020537585#LIP60_RS07560
RROmpR
19 471-20 172 nt · Forward (+)
LIP60_RS19080GCF_020537585#LIP60_RS19080
HKClassicCurrent focus
20 165-21 493 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS02020Use this link to inspect the representative gene detail.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2051464
Simplified PFAM architecture for HKOC_2051464
PFAM domain coverage: 58 / 442 aa (13.1%)
1 aa442 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[239-296]
- Domain count: 1
- Matched identifier: HKOC_2051464
- Positioned domains: HisKA 239-296
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS02020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020537585
AssemblyASM2053758v1 · Contighaploid
Genome composition3 783 815 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 52 · HK 24 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key