1 Response_reg#1
13-125 aa · 113 aa · 48.3% of protein
Raw token
Response_reg:13:0.0000000000165:125:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KZP16_RS00370
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_020526645
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020526645#KZP16_RS00370Stable P2CS identifier used across views.
GenomeGCF_020526645Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 234 aa (72.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.4% of protein
Raw token
HTH_LUXR:168:0.0000000000000179:224:57:58- Raw architecture: Response_reg:13:0.0000000000165:125:114:111#HTH_LUXR:168:0.0000000000000179:224:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020526645::NZ_JAHXFF010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span88111-88815Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKZP16_00370RefSeq proteinWP_181972183.1
Context group ID
GCF_020526645::NZ_JAHXFF010000001.1::G00002Context members
KZP16_RS00370
Partner locus tags
KZP16_RS00370
Partner old locus tags
KZP16_00370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_181972183.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TWK1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TWK1_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKZP16_RS00370Primary locus identifier stored in the genes table.
Old locus tagKZP16_00370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHXFF010000001.1Sequence record reported by the local genomic context database.
Genomic interval88 111-88 815 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 111-88 815 ntGCF_020526645::NZ_JAHXFF010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020526645::NZ_JAHXFF010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHXFF010000001.1All displayed genes belong to this local TCS context.
Neighborhood span88 111-88 815 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 111 nt88 815 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KZP16_RS00370GCF_020526645#KZP16_RS00370
RRNarLCurrent focus
88 111-88 815 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436315#DXD71_RS08575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055489
Simplified PFAM architecture for RROC_1055489
PFAM domain coverage: 163 / 234 aa (69.7%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-120] | GerE[170-223]
- Domain count: 2
- Matched identifier: RROC_1055489
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; GerE 170-223 ; GerE 170-223
Cluster members and taxonomy
Representative gene: GCF_003436315#DXD71_RS08575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020526645
AssemblyASM2052664v1 · Contighaploid
Genome composition2 222 395 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 10 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key