1 HisKA#1
184-249 aa · 66 aa · 14.2% of protein
Raw token
HisKA:184:0.00000000000325:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KZP10_RS01660
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_020526585
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020526585#KZP10_RS01660Stable P2CS identifier used across views.
GenomeGCF_020526585Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 464 aa (38.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 24.4% of protein
Raw token
HATPase_c:312:6.92e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000325:249:66:64#HATPase_c:312:6.92e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020526585::NZ_JAHXFC010000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148625-150795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKZP10_01660RefSeq proteinWP_226650177.1
Context group ID
GCF_020526585::NZ_JAHXFC010000003.1::G00004Context members
KZP10_RS01660KZP10_RS01665
Partner locus tags
KZP10_RS01660KZP10_RS01665
Partner old locus tags
KZP10_01660KZP10_01665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226650177.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKZP10_RS01660Primary locus identifier stored in the genes table.
Old locus tagKZP10_01660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHXFC010000003.1Sequence record reported by the local genomic context database.
Genomic interval148 625-150 019 nt1 395 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span148 625-150 795 ntGCF_020526585::NZ_JAHXFC010000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020526585::NZ_JAHXFC010000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHXFC010000003.1All displayed genes belong to this local TCS context.
Neighborhood span148 625-150 795 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 625 nt150 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KZP10_RS01660GCF_020526585#KZP10_RS01660
HKClassicCurrent focus
148 625-150 019 nt · Forward (+)
KZP10_RS01665GCF_020526585#KZP10_RS01665
RROmpR
150 091-150 795 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020526585#KZP10_RS01660The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1789396
Simplified PFAM architecture for HKOC_1789396
PFAM domain coverage: 177 / 464 aa (38.1%)
1 aa464 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1789396
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_020526585#KZP10_RS01660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020526585
AssemblyASM2052658v1 · Contighaploid
Genome composition2 247 926 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key