1 HisKA_3#1
216-280 aa · 65 aa · 14.5% of protein
Raw token
HisKA_3:216:0.00000000000000303:280:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KZP12_RS06935
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_020526225
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020526225#KZP12_RS06935Stable P2CS identifier used across views.
GenomeGCF_020526225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 449 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
326-435 aa · 110 aa · 24.5% of protein
Raw token
HATPase_c:326:0.0000000359:435:112:109- Raw architecture: HisKA_3:216:0.00000000000000303:280:65:68#HATPase_c:326:0.0000000359:435:112:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020526225::NZ_JAHXEK010000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25305-27313Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKZP12_06910RefSeq proteinWP_065435170.1
Context group ID
GCF_020526225::NZ_JAHXEK010000011.1::G00005Context members
KZP12_RS06930KZP12_RS06935
Partner locus tags
KZP12_RS06930KZP12_RS06935
Partner old locus tags
KZP12_06905KZP12_06910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065435170.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKZP12_RS06935Primary locus identifier stored in the genes table.
Old locus tagKZP12_06910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHXEK010000011.1Sequence record reported by the local genomic context database.
Genomic interval25 964-27 313 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 305-27 313 ntGCF_020526225::NZ_JAHXEK010000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020526225::NZ_JAHXEK010000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHXEK010000011.1All displayed genes belong to this local TCS context.
Neighborhood span25 305-27 313 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 305 nt27 313 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KZP12_RS06930GCF_020526225#KZP12_RS06930
RRNarL
25 305-25 964 nt · Reverse (-)
KZP12_RS06935GCF_020526225#KZP12_RS06935
HKClassicCurrent focus
25 964-27 313 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686025#BAD11_RS05550Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1975502
Simplified PFAM architecture for HKOC_1975502
PFAM domain coverage: 66 / 449 aa (14.7%)
1 aa449 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[216-281]
- Domain count: 1
- Matched identifier: HKOC_1975502
- Positioned domains: HisKA_3 216-281
Cluster members and taxonomy
Representative gene: GCF_001686025#BAD11_RS05550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020526225
AssemblyASM2052622v1 · Contighaploid
Genome composition2 414 591 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key