1 HisKA_3#1
210-275 aa · 66 aa · 15.4% of protein
Raw token
HisKA_3:210:0.00000000000106:275:69:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KZP12_RS06570
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_020526225
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020526225#KZP12_RS06570Stable P2CS identifier used across views.
GenomeGCF_020526225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 429 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000291:414:98:109- Raw architecture: HisKA_3:210:0.00000000000106:275:69:68#HATPase_c:330:0.000000000291:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020526225::NZ_JAHXEK010000010.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117668-119633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKZP12_06550RefSeq proteinWP_065439014.1
Context group ID
GCF_020526225::NZ_JAHXEK010000010.1::G00003Context members
KZP12_RS06565KZP12_RS06570
Partner locus tags
KZP12_RS06565KZP12_RS06570
Partner old locus tags
KZP12_06545KZP12_06550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065439014.1Primary protein accession used for annex mappings.
UniProt accessionA0AA43T7I2Primary UniProt accession resolved in the annex database.
UniProt IDA0AA43T7I2_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKZP12_RS06570Primary locus identifier stored in the genes table.
Old locus tagKZP12_06550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHXEK010000010.1Sequence record reported by the local genomic context database.
Genomic interval118 344-119 633 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 668-119 633 ntGCF_020526225::NZ_JAHXEK010000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020526225::NZ_JAHXEK010000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHXEK010000010.1All displayed genes belong to this local TCS context.
Neighborhood span117 668-119 633 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 668 nt119 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KZP12_RS06565GCF_020526225#KZP12_RS06565
RRNarL
117 668-118 351 nt · Reverse (-)
KZP12_RS06570GCF_020526225#KZP12_RS06570
HKClassicCurrent focus
118 344-119 633 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686065#BAD13_RS03605Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2181287
Simplified PFAM architecture for HKOC_2181287
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2181287
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_001686065#BAD13_RS03605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020526225
AssemblyASM2052622v1 · Contighaploid
Genome composition2 414 591 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key