1 Response_reg#1
10-113 aa · 104 aa · 48.4% of protein
Raw token
Response_reg:10:2.4e-17:113:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KZO93_RS06765
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_020526195
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020526195#KZO93_RS06765Stable P2CS identifier used across views.
GenomeGCF_020526195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 215 aa (75.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-209 aa · 58 aa · 27.0% of protein
Raw token
HTH_LUXR:152:0.0000000000873:209:58:58- Raw architecture: Response_reg:10:2.4e-17:113:104:111#HTH_LUXR:152:0.0000000000873:209:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020526195::NZ_JAHXEF010000005.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span154154-154801Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKZO93_06755RefSeq proteinWP_126016463.1
Context group ID
GCF_020526195::NZ_JAHXEF010000005.1::G00013Context members
KZO93_RS06765
Partner locus tags
KZO93_RS06765
Partner old locus tags
KZO93_06755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_126016463.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKZO93_RS06765Primary locus identifier stored in the genes table.
Old locus tagKZO93_06755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHXEF010000005.1Sequence record reported by the local genomic context database.
Genomic interval154 154-154 801 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 154-154 801 ntGCF_020526195::NZ_JAHXEF010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020526195::NZ_JAHXEF010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHXEF010000005.1All displayed genes belong to this local TCS context.
Neighborhood span154 154-154 801 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 154 nt154 801 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KZO93_RS06765GCF_020526195#KZO93_RS06765
RRNarLCurrent focus
154 154-154 801 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003952825#CWS99_RS06480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1913924
Simplified PFAM architecture for RROC_1913924
PFAM domain coverage: 163 / 215 aa (75.8%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-117] | GerE[154-208]
- Domain count: 2
- Matched identifier: RROC_1913924
- Positioned domains: Response_reg 10-117 ; Response_reg 10-117 ; GerE 154-208 ; GerE 154-208
Cluster members and taxonomy
Representative gene: GCF_003952825#CWS99_RS06480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020526195
AssemblyASM2052619v1 · Contighaploid
Genome composition2 256 499 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key