1 Response_reg#1
15-122 aa · 108 aa · 44.6% of protein
Raw token
Response_reg:15:1.58e-36:122:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KZO96_RS04235
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_020526125
ClassRRTypeOmpRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020526125#KZO96_RS04235Stable P2CS identifier used across views.
GenomeGCF_020526125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 242 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-235 aa · 72 aa · 29.8% of protein
Raw token
Trans_reg_C:164:4.28e-29:235:77:77- Raw architecture: Response_reg:15:1.58e-36:122:109:111#Trans_reg_C:164:4.28e-29:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020526125::NZ_JAHXEG010000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span314636-316460Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKZO96_04235RefSeq proteinWP_226668719.1
Context group ID
GCF_020526125::NZ_JAHXEG010000002.1::G00011Context members
KZO96_RS04230KZO96_RS04235
Partner locus tags
KZO96_RS04230KZO96_RS04235
Partner old locus tags
KZO96_04230KZO96_04235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226668719.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKZO96_RS04235Primary locus identifier stored in the genes table.
Old locus tagKZO96_04235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHXEG010000002.1Sequence record reported by the local genomic context database.
Genomic interval315 732-316 460 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span314 636-316 460 ntGCF_020526125::NZ_JAHXEG010000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020526125::NZ_JAHXEG010000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHXEG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span314 636-316 460 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
314 636 nt316 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KZO96_RS04230GCF_020526125#KZO96_RS04230
HKClassic
314 636-315 712 nt · Reverse (-)
KZO96_RS04235GCF_020526125#KZO96_RS04235
RROmpRCurrent focus
315 732-316 460 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020526125#KZO96_RS04235The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0853242
Simplified PFAM architecture for RROC_0853242
PFAM domain coverage: 180 / 242 aa (74.4%)
1 aa242 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-122] | Trans_reg_C[164-235]
- Domain count: 2
- Matched identifier: RROC_0853242
- Positioned domains: Response_reg 15-122 ; Trans_reg_C 164-235
Cluster members and taxonomy
Representative gene: GCF_020526125#KZO96_RS04235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020526125
AssemblyASM2052612v1 · Contighaploid
Genome composition2 340 805 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key