1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000219:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCQ52_RS04535
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_020353915
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020353915#LCQ52_RS04535Stable P2CS identifier used across views.
GenomeGCF_020353915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.0000000867:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000219:278:64:68#HATPase_c:325:0.0000000867:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020353915::NZ_CP084020.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1034750-1036755Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCQ52_04535RefSeq proteinWP_003829177.1
Context group ID
GCF_020353915::NZ_CP084020.1::G00006Context members
LCQ52_RS04530LCQ52_RS04535
Partner locus tags
LCQ52_RS04530LCQ52_RS04535
Partner old locus tags
LCQ52_04530LCQ52_04535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829177.1Primary protein accession used for annex mappings.
UniProt accessionD4BP44Primary UniProt accession resolved in the annex database.
UniProt IDD4BP44_BIFBRDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCQ52_RS04535Primary locus identifier stored in the genes table.
Old locus tagLCQ52_04535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084020.1Sequence record reported by the local genomic context database.
Genomic interval1 035 403-1 036 755 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 034 750-1 036 755 ntGCF_020353915::NZ_CP084020.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020353915::NZ_CP084020.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084020.1All displayed genes belong to this local TCS context.
Neighborhood span1 034 750-1 036 755 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 034 750 nt1 036 755 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LCQ52_RS04530GCF_020353915#LCQ52_RS04530
RRNarL
1 034 750-1 035 403 nt · Reverse (-)
LCQ52_RS04535GCF_020353915#LCQ52_RS04535
HKClassicCurrent focus
1 035 403-1 036 755 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007525#BL_RS03045Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1962050
Simplified PFAM architecture for HKOC_1962050
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1962050
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_000007525#BL_RS03045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_020353915
AssemblyASM2035391v1 · Complete Genomehaploid
Genome composition2 534 372 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key