1 Response_reg#1
46-152 aa · 107 aa · 41.0% of protein
Raw token
Response_reg:46:7.79e-30:152:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCQ52_RS04010
Response regulator, AmiR_NasR family
Bifidobacterium longum subsp. longum · GCF_020353915
ClassRRTypeAmiR_NasRLength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020353915#LCQ52_RS04010Stable P2CS identifier used across views.
GenomeGCF_020353915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 261 aa (59.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 ANTAR#2
199-247 aa · 49 aa · 18.8% of protein
Raw token
ANTAR:199:3.66e-17:247:49:49- Raw architecture: Response_reg:46:7.79e-30:152:108:111#ANTAR:199:3.66e-17:247:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020353915::NZ_CP084020.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span915425-916210Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCQ52_04010RefSeq proteinWP_032737932.1
Context group ID
GCF_020353915::NZ_CP084020.1::G00004Context members
LCQ52_RS04010
Partner locus tags
LCQ52_RS04010
Partner old locus tags
LCQ52_04010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032737932.1Primary protein accession used for annex mappings.
UniProt accessionA0A4R0UYZ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A4R0UYZ7_BIFLLDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCQ52_RS04010Primary locus identifier stored in the genes table.
Old locus tagLCQ52_04010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084020.1Sequence record reported by the local genomic context database.
Genomic interval915 425-916 210 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span915 425-916 210 ntGCF_020353915::NZ_CP084020.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020353915::NZ_CP084020.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084020.1All displayed genes belong to this local TCS context.
Neighborhood span915 425-916 210 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
915 425 nt916 210 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LCQ52_RS04010GCF_020353915#LCQ52_RS04010
RRAmiR_NasRCurrent focus
915 425-916 210 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730045#BL72_RS01250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648796
Simplified PFAM architecture for RROC_0648796
PFAM domain coverage: 161 / 261 aa (61.7%)
1 aa261 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[46-153] | ANTAR[195-247]
- Domain count: 2
- Matched identifier: RROC_0648796
- Positioned domains: Response_reg 46-153 ; Response_reg 46-153 ; ANTAR 195-247 ; ANTAR 195-247
Cluster members and taxonomy
Representative gene: GCF_000730045#BL72_RS01250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_020353915
AssemblyASM2035391v1 · Complete Genomehaploid
Genome composition2 534 372 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key