1 HisKA#1
558-624 aa · 67 aa · 8.6% of protein
Raw token
HisKA:558:1.69e-18:624:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LA355_RS04910
Histidine kinase, Classic
Clostridioides difficile · GCF_020341515
ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020341515#LA355_RS04910Stable P2CS identifier used across views.
GenomeGCF_020341515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa778 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
671-775 aa · 105 aa · 13.5% of protein
Raw token
HATPase_c:671:0.000000000364:775:110:109- Raw architecture: HisKA:558:1.69e-18:624:67:64#HATPase_c:671:0.000000000364:775:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020341515::NZ_CP084369.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1045471-1048495Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLA355_04910RefSeq proteinWP_022618542.1
Context group ID
GCF_020341515::NZ_CP084369.1::G00018Context members
LA355_RS04910LA355_RS04915
Partner locus tags
LA355_RS04910LA355_RS04915
Partner old locus tags
LA355_04910LA355_04915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022618542.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLA355_RS04910Primary locus identifier stored in the genes table.
Old locus tagLA355_04910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084369.1Sequence record reported by the local genomic context database.
Genomic interval1 045 471-1 047 807 nt2 337 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 045 471-1 048 495 ntGCF_020341515::NZ_CP084369.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020341515::NZ_CP084369.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084369.1All displayed genes belong to this local TCS context.
Neighborhood span1 045 471-1 048 495 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 045 471 nt1 048 495 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LA355_RS04910GCF_020341515#LA355_RS04910
HKClassicCurrent focus
1 045 471-1 047 807 nt · Reverse (-)
LA355_RS04915GCF_020341515#LA355_RS04915
RROmpR
1 047 779-1 048 495 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0215275Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0598844
Simplified PFAM architecture for HKOC_0598844
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0598844
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0215275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020341515
AssemblyASM2034151v1 · Chromosomehaploid
Genome composition4 307 330 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key