1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:1.63e-37:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LA355_RS00860
Response regulator OmpR family
Clostridioides difficile · GCF_020341515
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020341515#LA355_RS00860Stable P2CS identifier used across views.
GenomeGCF_020341515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 230 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-226 aa · 73 aa · 31.7% of protein
Raw token
Trans_reg_C:154:6.84e-31:226:73:77- Raw architecture: Response_reg:4:1.63e-37:112:110:111#Trans_reg_C:154:6.84e-31:226:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020341515::NZ_CP084369.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span165398-167014Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLA355_00860RefSeq proteinWP_016728879.1
Context group ID
GCF_020341515::NZ_CP084369.1::G00005Context members
LA355_RS00855LA355_RS00860
Partner locus tags
LA355_RS00855LA355_RS00860
Partner old locus tags
LA355_00855LA355_00860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016728879.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9CCW9Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9CCW9_EUBMLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLA355_RS00860Primary locus identifier stored in the genes table.
Old locus tagLA355_00860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084369.1Sequence record reported by the local genomic context database.
Genomic interval166 322-167 014 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span165 398-167 014 ntGCF_020341515::NZ_CP084369.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020341515::NZ_CP084369.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084369.1All displayed genes belong to this local TCS context.
Neighborhood span165 398-167 014 nt1 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 398 nt167 014 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LA355_RS00855GCF_020341515#LA355_RS00855
HKClassic
165 398-166 315 nt · Reverse (-)
LA355_RS00860GCF_020341515#LA355_RS00860
RROmpRCurrent focus
166 322-167 014 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0107600Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200872
Simplified PFAM architecture for RROC_1200872
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1200872
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0107600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020341515
AssemblyASM2034151v1 · Chromosomehaploid
Genome composition4 307 330 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key