1 HisKA#1
161-229 aa · 69 aa · 18.0% of protein
Raw token
HisKA:161:0.000000000000119:229:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HP394_RS04020
Histidine kinase, Classic
Clostridioides difficile · GCF_020295245
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020295245#HP394_RS04020Stable P2CS identifier used across views.
GenomeGCF_020295245Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 383 aa (46.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
276-382 aa · 107 aa · 27.9% of protein
Raw token
HATPase_c:276:7.51e-28:382:108:109- Raw architecture: HisKA:161:0.000000000000119:229:69:64#HATPase_c:276:7.51e-28:382:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020295245::NZ_JABUAG010000001.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span904030-905181Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHP394_04020RefSeq proteinWP_021395409.1
Context group ID
GCF_020295245::NZ_JABUAG010000001.1::G00018Context members
HP394_RS04020
Partner locus tags
HP394_RS04020
Partner old locus tags
HP394_04020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021395409.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHP394_RS04020Primary locus identifier stored in the genes table.
Old locus tagHP394_04020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABUAG010000001.1Sequence record reported by the local genomic context database.
Genomic interval904 030-905 181 nt1 152 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span904 030-905 181 ntGCF_020295245::NZ_JABUAG010000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020295245::NZ_JABUAG010000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABUAG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span904 030-905 181 nt1 152 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
904 030 nt905 181 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HP394_RS04020GCF_020295245#HP394_RS04020
HKClassicCurrent focus
904 030-905 181 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007001855#EWM06_RS07115Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2584029
Simplified PFAM architecture for HKOC_2584029
PFAM domain coverage: 167 / 383 aa (43.6%)
1 aa383 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[161-222] | HATPase_c[278-382]
- Domain count: 2
- Matched identifier: HKOC_2584029
- Positioned domains: HisKA 161-222 ; HATPase_c 278-382
Cluster members and taxonomy
Representative gene: GCF_007001855#EWM06_RS07115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020295245
AssemblyASM2029524v1 · Scaffoldhaploid
Genome composition4 134 161 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key