1 Response_reg#1
4-113 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:4:6.98e-19:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HO258_RS01605
Response regulator LytTR family
Clostridioides difficile · GCF_020295205
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020295205#HO258_RS01605Stable P2CS identifier used across views.
GenomeGCF_020295205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 236 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
140-228 aa · 89 aa · 37.7% of protein
Raw token
LytTR:140:1.08e-20:228:94:98- Raw architecture: Response_reg:4:6.98e-19:113:113:111#LytTR:140:1.08e-20:228:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020295205::NZ_JABGDK010000001.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span368711-369421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHO258_01605RefSeq proteinWP_009891854.1
Context group ID
GCF_020295205::NZ_JABGDK010000001.1::G00028Context members
HO258_RS01605
Partner locus tags
HO258_RS01605
Partner old locus tags
HO258_01605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891854.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74R1W9Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74R1W9_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHO258_RS01605Primary locus identifier stored in the genes table.
Old locus tagHO258_01605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABGDK010000001.1Sequence record reported by the local genomic context database.
Genomic interval368 711-369 421 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span368 711-369 421 ntGCF_020295205::NZ_JABGDK010000001.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020295205::NZ_JABGDK010000001.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABGDK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span368 711-369 421 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
368 711 nt369 421 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HO258_RS01605GCF_020295205#HO258_RS01605
RRLytTRCurrent focus
368 711-369 421 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0217155Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988175
Simplified PFAM architecture for RROC_0988175
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0988175
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0217155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020295205
AssemblyASM2029520v1 · Scaffoldhaploid
Genome composition4 114 262 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key