1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:6.17e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HL558_RS09510
Response regulator OmpR family
Clostridioides difficile · GCF_020295125
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020295125#HL558_RS09510Stable P2CS identifier used across views.
GenomeGCF_020295125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:1.2e-34:229:75:77- Raw architecture: Response_reg:5:6.17e-34:114:111:111#Trans_reg_C:155:1.2e-34:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020295125::NZ_JABGDG010000003.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span195364-197197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHL558_09505RefSeq proteinWP_021363522.1
Context group ID
GCF_020295125::NZ_JABGDG010000003.1::G00040Context members
HL558_RS09510HL558_RS09515
Partner locus tags
HL558_RS09510HL558_RS09515
Partner old locus tags
HL558_09505HL558_09510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363522.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHL558_RS09510Primary locus identifier stored in the genes table.
Old locus tagHL558_09505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABGDG010000003.1Sequence record reported by the local genomic context database.
Genomic interval195 364-196 065 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span195 364-197 197 ntGCF_020295125::NZ_JABGDG010000003.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020295125::NZ_JABGDG010000003.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABGDG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span195 364-197 197 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
195 364 nt197 197 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HL558_RS09510GCF_020295125#HL558_RS09510
RROmpRCurrent focus
195 364-196 065 nt · Forward (+)
HL558_RS09515GCF_020295125#HL558_RS09515
HKClassic
196 115-197 197 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448905#QAY_RS07915Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1082707
Simplified PFAM architecture for RROC_1082707
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1082707
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000448905#QAY_RS07915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_020295125
AssemblyASM2029512v1 · Scaffoldhaploid
Genome composition4 205 428 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key