1 Response_reg#1
5-113 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:5:1.88e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K8P06_RS17810
Response regulator OmpR family
Clostridioides difficile · GCF_019931025
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019931025#K8P06_RS17810Stable P2CS identifier used across views.
GenomeGCF_019931025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-225 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:148:4.94e-30:225:78:77- Raw architecture: Response_reg:5:1.88e-29:113:110:111#Trans_reg_C:148:4.94e-30:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019931025::NZ_CP082868.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3797526-3799461Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK8P06_17665RefSeq proteinWP_022615217.1
Context group ID
GCF_019931025::NZ_CP082868.1::G00055Context members
K8P06_RS17810K8P06_RS17815
Partner locus tags
K8P06_RS17810K8P06_RS17815
Partner old locus tags
K8P06_17665K8P06_17670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022615217.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GWY8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GWY8_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK8P06_RS17810Primary locus identifier stored in the genes table.
Old locus tagK8P06_17665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP082868.1Sequence record reported by the local genomic context database.
Genomic interval3 797 526-3 798 230 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 797 526-3 799 461 ntGCF_019931025::NZ_CP082868.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019931025::NZ_CP082868.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP082868.1All displayed genes belong to this local TCS context.
Neighborhood span3 797 526-3 799 461 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 797 526 nt3 799 461 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K8P06_RS17810GCF_019931025#K8P06_RS17810
RROmpRCurrent focus
3 797 526-3 798 230 nt · Forward (+)
K8P06_RS17815GCF_019931025#K8P06_RS17815
HKClassic
3 798 208-3 799 461 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164655#HMPREF0219_RS03000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862824
Simplified PFAM architecture for RROC_0862824
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862824
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000164655#HMPREF0219_RS03000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019931025
AssemblyASM1993102v1 · Complete Genomehaploid
Genome composition4 045 616 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key