1 HisKA#1
206-271 aa · 66 aa · 15.4% of protein
Raw token
HisKA:206:0.0000000116:271:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K8P06_RS08800
Histidine kinase, Classic
Clostridioides difficile · GCF_019931025
ClassHKTypeClassicLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019931025#K8P06_RS08800Stable P2CS identifier used across views.
GenomeGCF_019931025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 428 aa (39.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
322-425 aa · 104 aa · 24.3% of protein
Raw token
HATPase_c:322:8.6e-30:425:104:109- Raw architecture: HisKA:206:0.0000000116:271:66:64#HATPase_c:322:8.6e-30:425:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019931025::NZ_CP082868.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1913572-1915588Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019931025::NZ_CP082868.1::G00030Context members
K8P06_RS08795K8P06_RS08800
Partner locus tags
K8P06_RS08795K8P06_RS08800
Partner old locus tags
K8P06_08715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223380659.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK8P06_RS08800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP082868.1Sequence record reported by the local genomic context database.
Genomic interval1 914 302-1 915 588 nt1 287 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 913 572-1 915 588 ntGCF_019931025::NZ_CP082868.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019931025::NZ_CP082868.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP082868.1All displayed genes belong to this local TCS context.
Neighborhood span1 913 572-1 915 588 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 913 572 nt1 915 588 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K8P06_RS08795GCF_019931025#K8P06_RS08795
RROmpR
1 913 572-1 914 252 nt · Reverse (-)
K8P06_RS08800GCF_019931025#K8P06_RS08800
HKClassicCurrent focus
1 914 302-1 915 588 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0216030Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842458
Simplified PFAM architecture for HKOC_0842458
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842458
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0216030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019931025
AssemblyASM1993102v1 · Complete Genomehaploid
Genome composition4 045 616 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key