1 HisKA#1
123-170 aa · 48 aa · 14.4% of protein
Raw token
HisKA:123:0.00000484:170:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H3B84_RS06370
Histidine kinase, Classic
Clostridioides difficile · GCF_019880625
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019880625#H3B84_RS06370Stable P2CS identifier used across views.
GenomeGCF_019880625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 333 aa (47.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-324 aa · 109 aa · 32.7% of protein
Raw token
HATPase_c:216:2.6e-23:324:109:109- Raw architecture: HisKA:123:0.00000484:170:53:64#HATPase_c:216:2.6e-23:324:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019880625::NZ_JACGTL010000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1426618-1428321Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019880625::NZ_JACGTL010000001.1::G00020Context members
H3B84_RS06370H3B84_RS06375
Partner locus tags
H3B84_RS06370H3B84_RS06375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074089728.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH3B84_RS06370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JACGTL010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 426 618-1 427 619 nt1 002 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 426 618-1 428 321 ntGCF_019880625::NZ_JACGTL010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019880625::NZ_JACGTL010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACGTL010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 426 618-1 428 321 nt1 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 426 618 nt1 428 321 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H3B84_RS06370GCF_019880625#H3B84_RS06370
HKClassicCurrent focus
1 426 618-1 427 619 nt · Reverse (-)
H3B84_RS06375GCF_019880625#H3B84_RS06375
RROmpR
1 427 629-1 428 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019880625#H3B84_RS06370The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2852494
Simplified PFAM architecture for HKOC_2852494
PFAM domain coverage: 109 / 333 aa (32.7%)
1 aa333 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[217-325]
- Domain count: 1
- Matched identifier: HKOC_2852494
- Positioned domains: HATPase_c 217-325
Cluster members and taxonomy
Representative gene: GCF_019880625#H3B84_RS06370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019880625
AssemblyASM1988062v1 · Contighaploid
Genome composition4 431 626 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 52 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key