1 HisKA#1
18-84 aa · 67 aa · 28.0% of protein
Raw token
HisKA:18:7.41e-17:84:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI007_RS08625
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_019660445
ClassHKTypeClassicLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019660445#BLI007_RS08625Stable P2CS identifier used across views.
GenomeGCF_019660445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 239 aa (71.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
137-239 aa · 103 aa · 43.1% of protein
Raw token
HATPase_c:137:5.65e-26:239:103:109- Raw architecture: HisKA:18:7.41e-17:84:67:64#HATPase_c:137:5.65e-26:239:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019660445::NZ_JAIFOU010000002.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span339267-339986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI007_08625RefSeq proteinWP_012578192.1
Context group ID
GCF_019660445::NZ_JAIFOU010000002.1::G00019Context members
BLI007_RS08625
Partner locus tags
BLI007_RS08625
Partner old locus tags
BLI007_08625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012578192.1Primary protein accession used for annex mappings.
UniProt accessionB7GU34Primary UniProt accession resolved in the annex database.
UniProt IDB7GU34_BIFLSDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI007_RS08625Primary locus identifier stored in the genes table.
Old locus tagBLI007_08625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIFOU010000002.1Sequence record reported by the local genomic context database.
Genomic interval339 267-339 986 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span339 267-339 986 ntGCF_019660445::NZ_JAIFOU010000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019660445::NZ_JAIFOU010000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIFOU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span339 267-339 986 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
339 267 nt339 986 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLI007_RS08625GCF_019660445#BLI007_RS08625
HKClassicCurrent focus
339 267-339 986 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771105#OT96_RS02820Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2917029
Simplified PFAM architecture for HKOC_2917029
PFAM domain coverage: 169 / 255 aa (66.3%)
1 aa255 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[34-99] | HATPase_c[152-254]
- Domain count: 2
- Matched identifier: HKOC_2917029
- Positioned domains: HisKA 34-99 ; HATPase_c 152-254
Cluster members and taxonomy
Representative gene: GCF_000771105#OT96_RS02820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_019660445
AssemblyASM1966044v1 · Contighaploid
Genome composition2 859 213 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 12 · RR 23CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key