1 Response_reg#1
28-135 aa · 108 aa · 44.1% of protein
Raw token
Response_reg:28:2.68e-30:135:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI007_RS03795
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_019660445
ClassRRTypeOmpRLength245 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019660445#BLI007_RS03795Stable P2CS identifier used across views.
GenomeGCF_019660445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 245 aa (73.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
170-242 aa · 73 aa · 29.8% of protein
Raw token
Trans_reg_C:170:4.89e-23:242:75:77- Raw architecture: Response_reg:28:2.68e-30:135:111:111#Trans_reg_C:170:4.89e-23:242:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019660445::NZ_JAIFOU010000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span862730-864744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI007_03795RefSeq proteinWP_012577363.1
Context group ID
GCF_019660445::NZ_JAIFOU010000001.1::G00010Context members
BLI007_RS03795BLI007_RS03800
Partner locus tags
BLI007_RS03795BLI007_RS03800
Partner old locus tags
BLI007_03795BLI007_03800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012577363.1Primary protein accession used for annex mappings.
UniProt accessionA0A564V7U9Primary UniProt accession resolved in the annex database.
UniProt IDA0A564V7U9_BIFLIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI007_RS03795Primary locus identifier stored in the genes table.
Old locus tagBLI007_03795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIFOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval862 730-863 395 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span862 730-864 744 ntGCF_019660445::NZ_JAIFOU010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019660445::NZ_JAIFOU010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIFOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span862 730-864 744 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
862 730 nt864 744 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLI007_RS03795GCF_019660445#BLI007_RS03795
RROmpRCurrent focus
862 730-863 395 nt · Forward (+)
BLI007_RS03800GCF_019660445#BLI007_RS03800
HKClassic
863 455-864 744 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019660445#BLI007_RS03795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0797433
Simplified PFAM architecture for RROC_0797433
PFAM domain coverage: 180 / 245 aa (73.5%)
1 aa245 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[28-135] | Trans_reg_C[170-241]
- Domain count: 2
- Matched identifier: RROC_0797433
- Positioned domains: Response_reg 28-135 ; Trans_reg_C 170-241
Cluster members and taxonomy
Representative gene: GCF_019660445#BLI007_RS03795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_019660445
AssemblyASM1966044v1 · Contighaploid
Genome composition2 859 213 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 12 · RR 23CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key