1 Response_reg#1
11-125 aa · 115 aa · 48.9% of protein
Raw token
Response_reg:11:1.19e-25:125:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLI007_RS01090
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_019660445
ClassRRTypeNarLLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019660445#BLI007_RS01090Stable P2CS identifier used across views.
GenomeGCF_019660445Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 235 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-219 aa · 56 aa · 23.8% of protein
Raw token
HTH_LUXR:164:2.32e-16:219:56:58- Raw architecture: Response_reg:11:1.19e-25:125:115:111#HTH_LUXR:164:2.32e-16:219:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019660445::NZ_JAIFOU010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span226402-228451Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLI007_01090RefSeq proteinWP_012576893.1
Context group ID
GCF_019660445::NZ_JAIFOU010000001.1::G00005Context members
BLI007_RS01090BLI007_RS01095
Partner locus tags
BLI007_RS01090BLI007_RS01095
Partner old locus tags
BLI007_01090BLI007_01095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576893.1Primary protein accession used for annex mappings.
UniProt accessionB7GNY3Primary UniProt accession resolved in the annex database.
UniProt IDB7GNY3_BIFLSDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLI007_RS01090Primary locus identifier stored in the genes table.
Old locus tagBLI007_01090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIFOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval226 402-227 109 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span226 402-228 451 ntGCF_019660445::NZ_JAIFOU010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019660445::NZ_JAIFOU010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIFOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span226 402-228 451 nt2 050 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
226 402 nt228 451 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLI007_RS01090GCF_019660445#BLI007_RS01090
RRNarLCurrent focus
226 402-227 109 nt · Reverse (-)
BLI007_RS01095GCF_019660445#BLI007_RS01095
HKClassic
227 126-228 451 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS02470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016530
Simplified PFAM architecture for RROC_1016530
PFAM domain coverage: 169 / 235 aa (71.9%)
1 aa235 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-125] | GerE[166-219]
- Domain count: 2
- Matched identifier: RROC_1016530
- Positioned domains: Response_reg 11-125 ; Response_reg 11-125 ; GerE 166-219 ; GerE 166-219
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS02470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_019660445
AssemblyASM1966044v1 · Contighaploid
Genome composition2 859 213 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 41 · HK 12 · RR 23CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key