1 Response_reg#1
4-86 aa · 83 aa · 33.9% of protein
Raw token
Response_reg:4:0.0000000000937:86:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N63_RS10510
Response regulator LytTR family
Clostridioides difficile · GCF_019428025
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019428025#K1N63_RS10510Stable P2CS identifier used across views.
GenomeGCF_019428025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 245 aa (73.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-234 aa · 96 aa · 39.2% of protein
Raw token
LytTR:139:0.0000000000905:234:101:98- Raw architecture: Response_reg:4:0.0000000000937:86:84:111#LytTR:139:0.0000000000905:234:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019428025::NZ_JAFJUN010000017.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span91707-92444Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019428025::NZ_JAFJUN010000017.1::G00017Context members
K1N63_RS10510
Partner locus tags
K1N63_RS10510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044921505.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ0BKT2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ0BKT2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N63_RS10510Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAFJUN010000017.1Sequence record reported by the local genomic context database.
Genomic interval91 707-92 444 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 707-92 444 ntGCF_019428025::NZ_JAFJUN010000017.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019428025::NZ_JAFJUN010000017.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFJUN010000017.1All displayed genes belong to this local TCS context.
Neighborhood span91 707-92 444 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 707 nt92 444 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1N63_RS10510GCF_019428025#K1N63_RS10510
RRLytTRCurrent focus
91 707-92 444 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173975#EUBHAL_RS01920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789544
Simplified PFAM architecture for RROC_0789544
PFAM domain coverage: 207 / 245 aa (84.5%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[140-234]
- Domain count: 2
- Matched identifier: RROC_0789544
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 140-234 ; LytTR 140-234
Cluster members and taxonomy
Representative gene: GCF_000173975#EUBHAL_RS01920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019428025
AssemblyASM1942802v1 · Scaffoldhaploid
Genome composition4 042 661 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 50 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key