1 Response_reg#1
3-107 aa · 105 aa · 78.9% of protein
Raw token
Response_reg:3:1.8e-17:107:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N54_RS22050
Response regulator, CheY family
Clostridioides difficile · GCF_019427725
ClassRRTypeCheYLength133 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019427725#K1N54_RS22050Stable P2CS identifier used across views.
GenomeGCF_019427725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length133 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage105 / 133 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa133 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.8e-17:107:108:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019427725::NZ_JAFJUI010000867.1::G00056
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span61-459Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019427725::NZ_JAFJUI010000867.1::G00056Context members
K1N54_RS22050
Partner locus tags
K1N54_RS22050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219712246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N54_RS22050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAFJUI010000867.1Sequence record reported by the local genomic context database.
Genomic interval61-459 nt399 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61-459 ntGCF_019427725::NZ_JAFJUI010000867.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019427725::NZ_JAFJUI010000867.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFJUI010000867.1All displayed genes belong to this local TCS context.
Neighborhood span61-459 nt399 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 nt459 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1N54_RS22050GCF_019427725#K1N54_RS22050
RRCheYCurrent focus
61-459 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019427725#K1N54_RS22050The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2305065
Simplified PFAM architecture for RROC_2305065
PFAM domain coverage: 90 / 133 aa (67.7%)
1 aa133 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[23-112]
- Domain count: 1
- Matched identifier: RROC_2305065
- Positioned domains: Response_reg 23-112
Cluster members and taxonomy
Representative gene: GCF_019427725#K1N54_RS22050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019427725
AssemblyASM1942772v1 · Scaffoldhaploid
Genome composition4 317 631 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key