1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:2.46e-21:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N54_RS14380
Response regulator LytTR family
Clostridioides difficile · GCF_019427725
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019427725#K1N54_RS14380Stable P2CS identifier used across views.
GenomeGCF_019427725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 236 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:6.1e-19:227:93:98- Raw architecture: Response_reg:4:2.46e-21:108:108:111#LytTR:141:6.1e-19:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019427725::NZ_JAFJUI010000041.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span79457-80167Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019427725::NZ_JAFJUI010000041.1::G00042Context members
K1N54_RS14380
Partner locus tags
K1N54_RS14380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219711849.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N54_RS14380Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAFJUI010000041.1Sequence record reported by the local genomic context database.
Genomic interval79 457-80 167 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 457-80 167 ntGCF_019427725::NZ_JAFJUI010000041.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019427725::NZ_JAFJUI010000041.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFJUI010000041.1All displayed genes belong to this local TCS context.
Neighborhood span79 457-80 167 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 457 nt80 167 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1N54_RS14380GCF_019427725#K1N54_RS14380
RRLytTRCurrent focus
79 457-80 167 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019427725#K1N54_RS14380The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1002318
Simplified PFAM architecture for RROC_1002318
PFAM domain coverage: 194 / 236 aa (82.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[141-227]
- Domain count: 2
- Matched identifier: RROC_1002318
- Positioned domains: Response_reg 4-110 ; LytTR 141-227
Cluster members and taxonomy
Representative gene: GCF_019427725#K1N54_RS14380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019427725
AssemblyASM1942772v1 · Scaffoldhaploid
Genome composition4 317 631 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 46 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key