1 Response_reg#1
11-121 aa · 111 aa · 45.5% of protein
Raw token
Response_reg:11:2.99e-30:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N48_RS10890
Response regulator OmpR family
Clostridioides difficile · GCF_019427665
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019427665#K1N48_RS10890Stable P2CS identifier used across views.
GenomeGCF_019427665Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 244 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-238 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:162:2.2e-28:238:77:77- Raw architecture: Response_reg:11:2.99e-30:121:112:111#Trans_reg_C:162:2.2e-28:238:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019427665::NZ_JAGIWO010000027.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23749-25585Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019427665::NZ_JAGIWO010000027.1::G00029Context members
K1N48_RS19285K1N48_RS10890
Partner locus tags
K1N48_RS19285K1N48_RS10890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003421230.1Primary protein accession used for annex mappings.
UniProt accessionD5Q1S1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q1S1_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N48_RS10890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGIWO010000027.1Sequence record reported by the local genomic context database.
Genomic interval24 851-25 585 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 749-25 585 ntGCF_019427665::NZ_JAGIWO010000027.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019427665::NZ_JAGIWO010000027.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGIWO010000027.1All displayed genes belong to this local TCS context.
Neighborhood span23 749-25 585 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 749 nt25 585 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K1N48_RS19285GCF_019427665#K1N48_RS19285
HKClassic
23 749-24 513 nt · Reverse (-)
K1N48_RS10890GCF_019427665#K1N48_RS10890
RROmpRCurrent focus
24 851-25 585 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0200315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806097
Simplified PFAM architecture for RROC_0806097
PFAM domain coverage: 188 / 244 aa (77.0%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-121] | Trans_reg_C[162-238]
- Domain count: 2
- Matched identifier: RROC_0806097
- Positioned domains: Response_reg 11-121 ; Response_reg 11-121 ; Trans_reg_C 162-238 ; Trans_reg_C 162-238
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0200315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019427665
AssemblyASM1942766v1 · Scaffoldhaploid
Genome composition3 970 810 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 47 · RR 48CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key