1 HisKA#1
83-146 aa · 64 aa · 21.5% of protein
Raw token
HisKA:83:0.0000000000182:146:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N19_RS01930
Histidine kinase, Classic
Clostridioides difficile · GCF_019427025
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019427025#K1N19_RS01930Stable P2CS identifier used across views.
GenomeGCF_019427025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 298 aa (52.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-283 aa · 92 aa · 30.9% of protein
Raw token
HATPase_c:192:4.83e-18:283:93:109- Raw architecture: HisKA:83:0.0000000000182:146:64:64#HATPase_c:192:4.83e-18:283:93:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019427025::NZ_JAGIVR010000003.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63689-64585Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019427025::NZ_JAGIVR010000003.1::G00033Context members
K1N19_RS01930
Partner locus tags
K1N19_RS01930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077707346.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N19_RS01930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGIVR010000003.1Sequence record reported by the local genomic context database.
Genomic interval63 689-64 585 nt897 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 689-64 585 ntGCF_019427025::NZ_JAGIVR010000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019427025::NZ_JAGIVR010000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGIVR010000003.1All displayed genes belong to this local TCS context.
Neighborhood span63 689-64 585 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 689 nt64 585 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1N19_RS01930GCF_019427025#K1N19_RS01930
HKClassicCurrent focus
63 689-64 585 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003862575#EGM15_RS16000Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888966
Simplified PFAM architecture for HKOC_2888966
PFAM domain coverage: 151 / 298 aa (50.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-145] | HATPase_c[193-282]
- Domain count: 2
- Matched identifier: HKOC_2888966
- Positioned domains: HisKA 85-145 ; HATPase_c 193-282
Cluster members and taxonomy
Representative gene: GCF_003862575#EGM15_RS16000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019427025
AssemblyASM1942702v1 · Scaffoldhaploid
Genome composition4 228 721 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key