1 HisKA#1
290-356 aa · 67 aa · 8.4% of protein
Raw token
HisKA:290:5.34e-18:356:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N06_RS19725
Histidine kinase, Hybrid
Clostridioides difficile · GCF_019426845
ClassHKTypeHybridLength798 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019426845#K1N06_RS19725Stable P2CS identifier used across views.
GenomeGCF_019426845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length798 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage409 / 798 aa (51.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa798 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
404-522 aa · 119 aa · 14.9% of protein
Raw token
HATPase_c:404:4.51e-25:522:120:1093 Response_reg#3
538-642 aa · 105 aa · 13.2% of protein
Raw token
Response_reg:538:1.19e-21:642:105:1114 Response_reg#4
677-794 aa · 118 aa · 14.8% of protein
Raw token
Response_reg:677:9.6e-27:794:118:111- Raw architecture: HisKA:290:5.34e-18:356:67:64#HATPase_c:404:4.51e-25:522:120:109#Response_reg:538:1.19e-21:642:105:111#Response_reg:677:9.6e-27:794:118:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019426845::NZ_JAGIVK010000058.1::G00053
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span15262-17658Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019426845::NZ_JAGIVK010000058.1::G00053Context members
K1N06_RS19725
Partner locus tags
K1N06_RS19725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330626558.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N06_RS19725Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGIVK010000058.1Sequence record reported by the local genomic context database.
Genomic interval15 262-17 658 nt2 397 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 262-17 658 ntGCF_019426845::NZ_JAGIVK010000058.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019426845::NZ_JAGIVK010000058.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGIVK010000058.1All displayed genes belong to this local TCS context.
Neighborhood span15 262-17 658 nt2 397 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 262 nt17 658 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1N06_RS19725GCF_019426845#K1N06_RS19725
HKHybridCurrent focus
15 262-17 658 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449065#QCK_RS03940Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0484794
Simplified PFAM architecture for HKOC_0484794
PFAM domain coverage: 413 / 852 aa (48.5%)
1 aa852 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[344-410] | HATPase_c[458-575] | Response_reg[592-702] | Response_reg[731-847]
- Domain count: 4
- Matched identifier: HKOC_0484794
- Positioned domains: HisKA 344-410 ; HATPase_c 458-575 ; Response_reg 592-702 ; Response_reg 731-847
Cluster members and taxonomy
Representative gene: GCF_000449065#QCK_RS03940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019426845
AssemblyASM1942684v1 · Scaffoldhaploid
Genome composition4 648 325 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 48 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key