1 HAMP#1
62-131 aa · 70 aa · 18.6% of protein
Raw token
HAMP:62:0.0000000000103:131:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N14_RS17280
Histidine kinase, Classic
Clostridioides difficile · GCF_019426665
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019426665#K1N14_RS17280Stable P2CS identifier used across views.
GenomeGCF_019426665Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 376 aa (65.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation3 items
2 HisKA#2
156-221 aa · 66 aa · 17.6% of protein
Raw token
HisKA:156:0.0000000000000217:221:66:643 HATPase_c#3
268-376 aa · 109 aa · 29.0% of protein
Raw token
HATPase_c:268:5.38e-17:376:110:109- Raw architecture: HAMP:62:0.0000000000103:131:70:69#HisKA:156:0.0000000000000217:221:66:64#HATPase_c:268:5.38e-17:376:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019426665::NZ_JAGIVC010000038.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73896-75694Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019426665::NZ_JAGIVC010000038.1::G00033Context members
K1N14_RS17275K1N14_RS17280
Partner locus tags
K1N14_RS17275K1N14_RS17280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077723592.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N14_RS17280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGIVC010000038.1Sequence record reported by the local genomic context database.
Genomic interval74 564-75 694 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 896-75 694 ntGCF_019426665::NZ_JAGIVC010000038.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019426665::NZ_JAGIVC010000038.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGIVC010000038.1All displayed genes belong to this local TCS context.
Neighborhood span73 896-75 694 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 896 nt75 694 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K1N14_RS17275GCF_019426665#K1N14_RS17275
RROmpR
73 896-74 567 nt · Forward (+)
K1N14_RS17280GCF_019426665#K1N14_RS17280
HKClassicCurrent focus
74 564-75 694 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003456975#CDIF102859_RS17735Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2643267
Simplified PFAM architecture for HKOC_2643267
PFAM domain coverage: 226 / 376 aa (60.1%)
1 aa376 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[79-131] | HisKA[156-221] | HATPase_c[268-374]
- Domain count: 3
- Matched identifier: HKOC_2643267
- Positioned domains: HAMP 79-131 ; HisKA 156-221 ; HATPase_c 268-374
Cluster members and taxonomy
Representative gene: GCF_003456975#CDIF102859_RS17735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019426665
AssemblyASM1942666v1 · Scaffoldhaploid
Genome composition4 489 729 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 43 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key