1 Response_reg#1
4-114 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:4:2.7e-31:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N08_RS09670
Response regulator OmpR family
Clostridioides difficile · GCF_019426615
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019426615#K1N08_RS09670Stable P2CS identifier used across views.
GenomeGCF_019426615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:152:1.16e-34:228:77:77- Raw architecture: Response_reg:4:2.7e-31:114:112:111#Trans_reg_C:152:1.16e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019426615::NZ_JAFJTW010000111.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19674-21284Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019426615::NZ_JAFJTW010000111.1::G00008Context members
K1N08_RS09665K1N08_RS09670
Partner locus tags
K1N08_RS09665K1N08_RS09670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001206786.1Primary protein accession used for annex mappings.
UniProt accessionA0AAD3A488Primary UniProt accession resolved in the annex database.
UniProt IDA0AAD3A488_STRAGDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N08_RS09670Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAFJTW010000111.1Sequence record reported by the local genomic context database.
Genomic interval20 586-21 284 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 674-21 284 ntGCF_019426615::NZ_JAFJTW010000111.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019426615::NZ_JAFJTW010000111.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFJTW010000111.1All displayed genes belong to this local TCS context.
Neighborhood span19 674-21 284 nt1 611 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 674 nt21 284 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K1N08_RS09665GCF_019426615#K1N08_RS09665
HKClassic
19 674-20 582 nt · Reverse (-)
K1N08_RS09670GCF_019426615#K1N08_RS09670
RROmpRCurrent focus
20 586-21 284 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000289375#SAG0161_RS115635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120648
Simplified PFAM architecture for RROC_1120648
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1120648
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000289375#SAG0161_RS115635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019426615
AssemblyASM1942661v1 · Scaffoldhaploid
Genome composition4 359 807 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 49 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key