1 Response_reg#1
5-116 aa · 112 aa · 49.8% of protein
Raw token
Response_reg:5:1.67e-34:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N08_RS08760
Response regulator OmpR family
Clostridioides difficile · GCF_019426615
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019426615#K1N08_RS08760Stable P2CS identifier used across views.
GenomeGCF_019426615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-225 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:154:3.37e-33:225:72:77- Raw architecture: Response_reg:5:1.67e-34:116:112:111#Trans_reg_C:154:3.37e-33:225:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019426615::NZ_JAFJTW010000101.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19379-20053Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019426615::NZ_JAFJTW010000101.1::G00006Context members
K1N08_RS08760
Partner locus tags
K1N08_RS08760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219666333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N08_RS08760Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAFJTW010000101.1Sequence record reported by the local genomic context database.
Genomic interval19 379-20 053 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 379-20 053 ntGCF_019426615::NZ_JAFJTW010000101.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019426615::NZ_JAFJTW010000101.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFJTW010000101.1All displayed genes belong to this local TCS context.
Neighborhood span19 379-20 053 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 379 nt20 053 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1N08_RS08760GCF_019426615#K1N08_RS08760
RROmpRCurrent focus
19 379-20 053 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0213320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199617
Simplified PFAM architecture for RROC_1199617
PFAM domain coverage: 187 / 230 aa (81.3%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-116] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1199617
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0213320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019426615
AssemblyASM1942661v1 · Scaffoldhaploid
Genome composition4 359 807 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 49 · RR 57CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key