1 Response_reg#1
1-69 aa · 69 aa · 100.0% of protein
Raw token
Response_reg:1:0.00000000000000211:69:72:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K1N11_RS19060
Response regulator, CheY family
Clostridioides difficile · GCF_019426605
ClassRRTypeCheYLength69 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019426605#K1N11_RS19060Stable P2CS identifier used across views.
GenomeGCF_019426605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length69 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage69 / 69 aa (100.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa69 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:0.00000000000000211:69:72:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019426605::NZ_JAFJTV010000115.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-208Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019426605::NZ_JAFJTV010000115.1::G00015Context members
K1N11_RS19060
Partner locus tags
K1N11_RS19060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219715773.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK1N11_RS19060Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAFJTV010000115.1Sequence record reported by the local genomic context database.
Genomic interval1-208 nt208 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-208 ntGCF_019426605::NZ_JAFJTV010000115.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019426605::NZ_JAFJTV010000115.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFJTV010000115.1All displayed genes belong to this local TCS context.
Neighborhood span1-208 nt208 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt208 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K1N11_RS19060GCF_019426605#K1N11_RS19060
RRCheYCurrent focus
1-208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449065#QCK_RS01140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962917
Simplified PFAM architecture for RROC_0962917
PFAM domain coverage: 178 / 237 aa (75.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[27-112] | LytTR[137-228]
- Domain count: 2
- Matched identifier: RROC_0962917
- Positioned domains: Response_reg 27-112 ; Response_reg 27-112 ; LytTR 137-228 ; LytTR 137-228
Cluster members and taxonomy
Representative gene: GCF_000449065#QCK_RS01140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_019426605
AssemblyASM1942660v1 · Scaffoldhaploid
Genome composition4 138 747 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 45 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key