1 HAMP#1
155-224 aa · 70 aa · 14.8% of protein
Raw token
HAMP:155:0.00000000000000344:224:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0809_RS03265
Histidine kinase, Classic
Bacillus mycoides · GCF_019389875
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019389875#K0809_RS03265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 474 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa474 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-314 aa · 66 aa · 13.9% of protein
Raw token
HisKA:249:0.000000000000067:314:66:643 HATPase_c#3
360-473 aa · 114 aa · 24.1% of protein
Raw token
HATPase_c:360:5.97e-18:473:115:109- Raw architecture: HAMP:155:0.00000000000000344:224:70:69#HisKA:249:0.000000000000067:314:66:64#HATPase_c:360:5.97e-18:473:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019389875::NZ_QKKC01000007.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12355-14437Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019389875::NZ_QKKC01000007.1::G00011Context members
K0809_RS03265K0809_RS03270
Partner locus tags
K0809_RS03265K0809_RS03270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219374868.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0809_RS03265Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QKKC01000007.1Sequence record reported by the local genomic context database.
Genomic interval12 355-13 779 nt1 425 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 355-14 437 ntGCF_019389875::NZ_QKKC01000007.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019389875::NZ_QKKC01000007.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QKKC01000007.1All displayed genes belong to this local TCS context.
Neighborhood span12 355-14 437 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 355 nt14 437 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0809_RS03265GCF_019389875#K0809_RS03265
HKClassicCurrent focus
12 355-13 779 nt · Reverse (-)
K0809_RS03270GCF_019389875#K0809_RS03270
RROmpR
13 772-14 437 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019389875#K0809_RS03265The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1680370
Simplified PFAM architecture for HKOC_1680370
PFAM domain coverage: 229 / 474 aa (48.3%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[172-224] | HisKA[250-314] | HATPase_c[361-471]
- Domain count: 3
- Matched identifier: HKOC_1680370
- Positioned domains: HAMP 172-224 ; HisKA 250-314 ; HATPase_c 361-471
Cluster members and taxonomy
Representative gene: GCF_019389875#K0809_RS03265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_019389875
AssemblyASM1938987v1 · Contighaploid
Genome composition6 275 957 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 68 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key