1 Response_reg#1
13-122 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:13:2.79e-35:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0809_RS00345
Response regulator OmpR family
Bacillus mycoides · GCF_019389875
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019389875#K0809_RS00345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 228 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-226 aa · 70 aa · 30.7% of protein
Raw token
Trans_reg_C:157:2.09e-30:226:75:77- Raw architecture: Response_reg:13:2.79e-35:122:111:111#Trans_reg_C:157:2.09e-30:226:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019389875::NZ_QKKC01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80579-82754Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_019389875::NZ_QKKC01000001.1::G00005Context members
K0809_RS00345K0809_RS00350
Partner locus tags
K0809_RS00345K0809_RS00350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219374589.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0809_RS00345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_QKKC01000001.1Sequence record reported by the local genomic context database.
Genomic interval80 579-81 265 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 579-82 754 ntGCF_019389875::NZ_QKKC01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019389875::NZ_QKKC01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QKKC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span80 579-82 754 nt2 176 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 579 nt82 754 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0809_RS00345GCF_019389875#K0809_RS00345
RROmpRCurrent focus
80 579-81 265 nt · Forward (+)
K0809_RS00350GCF_019389875#K0809_RS00350
HKClassic
81 279-82 754 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019389875#K0809_RS00345The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1327080
Simplified PFAM architecture for RROC_1327080
PFAM domain coverage: 178 / 228 aa (78.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-121] | Trans_reg_C[157-225]
- Domain count: 2
- Matched identifier: RROC_1327080
- Positioned domains: Response_reg 13-121 ; Trans_reg_C 157-225
Cluster members and taxonomy
Representative gene: GCF_019389875#K0809_RS00345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_019389875
AssemblyASM1938987v1 · Contighaploid
Genome composition6 275 957 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 68 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key