1 HAMP#1
313-380 aa · 68 aa · 11.0% of protein
Raw token
HAMP:313:0.000000000000032:380:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6L50_RS08960
Histidine kinase, Classic
Bacillus sp. FDAARGOS_1420 · GCF_019344915
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019344915#I6L50_RS08960Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 619 aa (39.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation3 items
2 HisKA#2
400-464 aa · 65 aa · 10.5% of protein
Raw token
HisKA:400:0.0000000000000138:464:65:643 HATPase_c#3
508-618 aa · 111 aa · 17.9% of protein
Raw token
HATPase_c:508:7.07e-23:618:112:109- Raw architecture: HAMP:313:0.000000000000032:380:68:69#HisKA:400:0.0000000000000138:464:65:64#HATPase_c:508:7.07e-23:618:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019344915::NZ_JAHWJB010000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1688384-1690929Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6L50_08960RefSeq proteinWP_219301146.1
Context group ID
GCF_019344915::NZ_JAHWJB010000001.1::G00025Context members
I6L50_RS08955I6L50_RS08960
Partner locus tags
I6L50_RS08955I6L50_RS08960
Partner old locus tags
I6L50_08955I6L50_08960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219301146.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6L50_RS08960Primary locus identifier stored in the genes table.
Old locus tagI6L50_08960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHWJB010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 689 070-1 690 929 nt1 860 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 688 384-1 690 929 ntGCF_019344915::NZ_JAHWJB010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019344915::NZ_JAHWJB010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHWJB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 688 384-1 690 929 nt2 546 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 688 384 nt1 690 929 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6L50_RS08955GCF_019344915#I6L50_RS08955
RROmpR
1 688 384-1 689 073 nt · Forward (+)
I6L50_RS08960GCF_019344915#I6L50_RS08960
HKClassicCurrent focus
1 689 070-1 690 929 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019344915#I6L50_RS08960The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0976287
Simplified PFAM architecture for HKOC_0976287
PFAM domain coverage: 226 / 619 aa (36.5%)
1 aa619 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[331-380] | HisKA[400-464] | HATPase_c[508-618]
- Domain count: 3
- Matched identifier: HKOC_0976287
- Positioned domains: HAMP 331-380 ; HisKA 400-464 ; HATPase_c 508-618
Cluster members and taxonomy
Representative gene: GCF_019344915#I6L50_RS08960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 856 338 · GCF_019344915
AssemblyASM1934491v1 · Scaffoldhaploid
Genome composition6 754 466 bp · 35,5% GCBacillus sp. FDAARGOS_1420
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key