1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:1.03e-40:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6L50_RS08725
Response regulator OmpR family
Bacillus sp. FDAARGOS_1420 · GCF_019344915
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019344915#I6L50_RS08725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:154:7.81e-34:230:77:77- Raw architecture: Response_reg:6:1.03e-40:115:111:111#Trans_reg_C:154:7.81e-34:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019344915::NZ_JAHWJB010000001.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1643777-1645574Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6L50_08725RefSeq proteinWP_219301116.1
Context group ID
GCF_019344915::NZ_JAHWJB010000001.1::G00023Context members
I6L50_RS08725I6L50_RS08730
Partner locus tags
I6L50_RS08725I6L50_RS08730
Partner old locus tags
I6L50_08725I6L50_08730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219301116.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6L50_RS08725Primary locus identifier stored in the genes table.
Old locus tagI6L50_08725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHWJB010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 643 777-1 644 475 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 643 777-1 645 574 ntGCF_019344915::NZ_JAHWJB010000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019344915::NZ_JAHWJB010000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHWJB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 643 777-1 645 574 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 643 777 nt1 645 574 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6L50_RS08725GCF_019344915#I6L50_RS08725
RROmpRCurrent focus
1 643 777-1 644 475 nt · Forward (+)
I6L50_RS08730GCF_019344915#I6L50_RS08730
HKClassic
1 644 468-1 645 574 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019344915#I6L50_RS08725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1138312
Simplified PFAM architecture for RROC_1138312
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1138312
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_019344915#I6L50_RS08725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 856 338 · GCF_019344915
AssemblyASM1934491v1 · Scaffoldhaploid
Genome composition6 754 466 bp · 35,5% GCBacillus sp. FDAARGOS_1420
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key