1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:5.71e-41:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6L50_RS06255
Response regulator OmpR family
Bacillus sp. FDAARGOS_1420 · GCF_019344915
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019344915#I6L50_RS06255Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:1.04e-28:221:77:77- Raw architecture: Response_reg:3:5.71e-41:112:111:111#Trans_reg_C:148:1.04e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019344915::NZ_JAHWJB010000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1203970-1206083Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6L50_06255RefSeq proteinWP_219300892.1
Context group ID
GCF_019344915::NZ_JAHWJB010000001.1::G00020Context members
I6L50_RS06255I6L50_RS06260
Partner locus tags
I6L50_RS06255I6L50_RS06260
Partner old locus tags
I6L50_06255I6L50_06260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219300892.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6L50_RS06255Primary locus identifier stored in the genes table.
Old locus tagI6L50_06255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHWJB010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 203 970-1 204 641 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 203 970-1 206 083 ntGCF_019344915::NZ_JAHWJB010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019344915::NZ_JAHWJB010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHWJB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 203 970-1 206 083 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 203 970 nt1 206 083 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I6L50_RS06255GCF_019344915#I6L50_RS06255
RROmpRCurrent focus
1 203 970-1 204 641 nt · Forward (+)
I6L50_RS06260GCF_019344915#I6L50_RS06260
HKClassic
1 204 653-1 206 083 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019344915#I6L50_RS06255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1611517
Simplified PFAM architecture for RROC_1611517
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1611517
- Positioned domains: Response_reg 3-111 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_019344915#I6L50_RS06255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 856 338 · GCF_019344915
AssemblyASM1934491v1 · Scaffoldhaploid
Genome composition6 754 466 bp · 35,5% GCBacillus sp. FDAARGOS_1420
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key