1 Response_reg#1
4-115 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:4:5.38e-28:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I6L50_RS01885
Response regulator, unclassified
Bacillus sp. FDAARGOS_1420 · GCF_019344915
ClassRRTypeunclassifiedLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019344915#I6L50_RS01885Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regCitT
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 235 aa (60.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 CitTSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 CitT#2
131-160 aa · 30 aa · 12.8% of protein
Raw token
CitT:131:0.000096:160:30:30- Raw architecture: Response_reg:4:5.38e-28:115:112:111#CitT:131:0.000096:160:30:30
- Domain description: 1 Response_reg,1 CitT
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019344915::NZ_JAHWJB010000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span337117-337824Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI6L50_01885RefSeq proteinWP_219300275.1
Context group ID
GCF_019344915::NZ_JAHWJB010000001.1::G00007Context members
I6L50_RS01885
Partner locus tags
I6L50_RS01885
Partner old locus tags
I6L50_01885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_219300275.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI6L50_RS01885Primary locus identifier stored in the genes table.
Old locus tagI6L50_01885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHWJB010000001.1Sequence record reported by the local genomic context database.
Genomic interval337 117-337 824 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span337 117-337 824 ntGCF_019344915::NZ_JAHWJB010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019344915::NZ_JAHWJB010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHWJB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span337 117-337 824 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
337 117 nt337 824 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I6L50_RS01885GCF_019344915#I6L50_RS01885
RRunclassifiedCurrent focus
337 117-337 824 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019344915#I6L50_RS01885The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1031500
Simplified PFAM architecture for RROC_1031500
PFAM domain coverage: 112 / 235 aa (47.7%)
1 aa235 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1031500
- Positioned domains: Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_019344915#I6L50_RS01885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 856 338 · GCF_019344915
AssemblyASM1934491v1 · Scaffoldhaploid
Genome composition6 754 466 bp · 35,5% GCBacillus sp. FDAARGOS_1420
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key