1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:5.85e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY69_RS01610
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_019131675
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131675#KSY69_RS01610Stable P2CS identifier used across views.
GenomeGCF_019131675Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:6.41e-33:229:77:77- Raw architecture: Response_reg:4:5.85e-38:113:111:111#Trans_reg_C:153:6.41e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131675::NZ_JAHOMQ010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span399589-401702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY69_01620RefSeq proteinWP_003807850.1
Context group ID
GCF_019131675::NZ_JAHOMQ010000001.1::G00007Context members
KSY69_RS01605KSY69_RS01610
Partner locus tags
KSY69_RS01605KSY69_RS01610
Partner old locus tags
KSY69_01615KSY69_01620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003807850.1Primary protein accession used for annex mappings.
UniProt accessionA0A087DLQ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A087DLQ7_BIFADDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY69_RS01610Primary locus identifier stored in the genes table.
Old locus tagKSY69_01620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOMQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval400 998-401 702 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span399 589-401 702 ntGCF_019131675::NZ_JAHOMQ010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131675::NZ_JAHOMQ010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOMQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span399 589-401 702 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
399 589 nt401 702 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY69_RS01605GCF_019131675#KSY69_RS01605
HKClassic
399 589-400 998 nt · Forward (+)
KSY69_RS01610GCF_019131675#KSY69_RS01610
RROmpRCurrent focus
400 998-401 702 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS01470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047106
Simplified PFAM architecture for RROC_1047106
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1047106
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS01470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_019131675
AssemblyASM1913167v1 · Contighaploid
Genome composition2 323 245 bp · 58,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key