1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:8.04e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY81_RS11515
Response regulator OmpR family
Thomasclavelia ramosa · GCF_019131335
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131335#KSY81_RS11515Stable P2CS identifier used across views.
GenomeGCF_019131335Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-223 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:149:1.99e-19:223:76:77- Raw architecture: Response_reg:3:8.04e-28:115:113:111#Trans_reg_C:149:1.99e-19:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131335::NZ_JAHOLY010000018.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65670-67642Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY81_11505RefSeq proteinWP_217294842.1
Context group ID
GCF_019131335::NZ_JAHOLY010000018.1::G00010Context members
KSY81_RS11515KSY81_RS11520
Partner locus tags
KSY81_RS11515KSY81_RS11520
Partner old locus tags
KSY81_11505KSY81_11510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217294842.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY81_RS11515Primary locus identifier stored in the genes table.
Old locus tagKSY81_11505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOLY010000018.1Sequence record reported by the local genomic context database.
Genomic interval65 670-66 356 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 670-67 642 ntGCF_019131335::NZ_JAHOLY010000018.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131335::NZ_JAHOLY010000018.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOLY010000018.1All displayed genes belong to this local TCS context.
Neighborhood span65 670-67 642 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 670 nt67 642 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY81_RS11515GCF_019131335#KSY81_RS11515
RROmpRCurrent focus
65 670-66 356 nt · Forward (+)
KSY81_RS11520GCF_019131335#KSY81_RS11520
HKClassic
66 350-67 642 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019052555#KTQ95_RS11360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1326851
Simplified PFAM architecture for RROC_1326851
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1326851
- Positioned domains: Response_reg 3-115 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_019052555#KTQ95_RS11360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019131335
AssemblyASM1913133v1 · Contighaploid
Genome composition3 723 002 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 61 · HK 28 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key