1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:5.83e-135:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY81_RS08715
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019131335
ClassHKTypeClassicLength896 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_019131335#KSY81_RS08715Stable P2CS identifier used across views.
GenomeGCF_019131335Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 896 aa (43.5%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation3 items
2 HisKA#2
668-735 aa · 68 aa · 7.6% of protein
Raw token
HisKA:668:0.00000000000236:735:68:643 HATPase_c#3
780-891 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:780:2.49e-29:891:112:109- Raw architecture: KdpD:23:5.83e-135:232:210:210#HisKA:668:0.00000000000236:735:68:64#HATPase_c:780:2.49e-29:891:112:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_019131335::NZ_JAHOLY010000011.1::G00002
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span67087-72661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY81_08710RefSeq proteinWP_117561342.1
Context group ID
GCF_019131335::NZ_JAHOLY010000011.1::G00002Context members
KSY81_RS08700KSY81_RS08705KSY81_RS08710KSY81_RS08715
Partner locus tags
KSY81_RS08700KSY81_RS08705KSY81_RS08710KSY81_RS08715
Partner old locus tags
KSY81_08695KSY81_08700KSY81_08705KSY81_08710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117561342.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY81_RS08715Primary locus identifier stored in the genes table.
Old locus tagKSY81_08710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOLY010000011.1Sequence record reported by the local genomic context database.
Genomic interval69 971-72 661 nt2 691 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 087-72 661 ntGCF_019131335::NZ_JAHOLY010000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131335::NZ_JAHOLY010000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOLY010000011.1All displayed genes belong to this local TCS context.
Neighborhood span67 087-72 661 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 087 nt72 661 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
KSY81_RS08700GCF_019131335#KSY81_RS08700
RROmpR
67 087-67 770 nt · Reverse (-)
KSY81_RS08705GCF_019131335#KSY81_RS08705
HKClassic
67 763-69 223 nt · Reverse (-)
KSY81_RS08710GCF_019131335#KSY81_RS08710
RROmpR
69 268-69 978 nt · Reverse (-)
KSY81_RS08715GCF_019131335#KSY81_RS08715
HKClassicCurrent focus
69 971-72 661 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS02720Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0413824
Simplified PFAM architecture for HKOC_0413824
PFAM domain coverage: 495 / 896 aa (55.2%)
1 aa896 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[23-232] | DUF4118[399-504] | HisKA[668-735] | HATPase_c[780-890]
- Domain count: 4
- Matched identifier: HKOC_0413824
- Positioned domains: KdpD 23-232 ; DUF4118 399-504 ; HisKA 668-735 ; HATPase_c 780-890
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS02720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019131335
AssemblyASM1913133v1 · Contighaploid
Genome composition3 723 002 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 61 · HK 28 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key