1 HisKA#1
184-249 aa · 66 aa · 14.2% of protein
Raw token
HisKA:184:0.00000000000333:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY53_RS01145
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_019131145
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131145#KSY53_RS01145Stable P2CS identifier used across views.
GenomeGCF_019131145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 464 aa (38.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 24.4% of protein
Raw token
HATPase_c:312:4.85e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000333:249:66:64#HATPase_c:312:4.85e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131145::NZ_JAHOMC010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span249479-251649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY53_01145RefSeq proteinWP_118269126.1
Context group ID
GCF_019131145::NZ_JAHOMC010000001.1::G00004Context members
KSY53_RS01140KSY53_RS01145
Partner locus tags
KSY53_RS01140KSY53_RS01145
Partner old locus tags
KSY53_01140KSY53_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118269126.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY53_RS01145Primary locus identifier stored in the genes table.
Old locus tagKSY53_01145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOMC010000001.1Sequence record reported by the local genomic context database.
Genomic interval250 255-251 649 nt1 395 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span249 479-251 649 ntGCF_019131145::NZ_JAHOMC010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131145::NZ_JAHOMC010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOMC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span249 479-251 649 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
249 479 nt251 649 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY53_RS01140GCF_019131145#KSY53_RS01140
RROmpR
249 479-250 183 nt · Reverse (-)
KSY53_RS01145GCF_019131145#KSY53_RS01145
HKClassicCurrent focus
250 255-251 649 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466105#DWV18_RS04150Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1786612
Simplified PFAM architecture for HKOC_1786612
PFAM domain coverage: 177 / 464 aa (38.1%)
1 aa464 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1786612
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_003466105#DWV18_RS04150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_019131145
AssemblyASM1913114v1 · Contighaploid
Genome composition2 206 142 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key