1 Response_reg#1
10-123 aa · 114 aa · 50.0% of protein
Raw token
Response_reg:10:5.43e-17:123:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY53_RS00620
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_019131145
ClassRRTypeNarLLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_019131145#KSY53_RS00620Stable P2CS identifier used across views.
GenomeGCF_019131145Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 228 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-222 aa · 58 aa · 25.4% of protein
Raw token
HTH_LUXR:165:7.39e-27:222:58:58- Raw architecture: Response_reg:10:5.43e-17:123:114:111#HTH_LUXR:165:7.39e-27:222:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_019131145::NZ_JAHOMC010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span146072-146758Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY53_00620RefSeq proteinWP_065435508.1
Context group ID
GCF_019131145::NZ_JAHOMC010000001.1::G00002Context members
KSY53_RS00620
Partner locus tags
KSY53_RS00620
Partner old locus tags
KSY53_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065435508.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TRT2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TRT2_BIFPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY53_RS00620Primary locus identifier stored in the genes table.
Old locus tagKSY53_00620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOMC010000001.1Sequence record reported by the local genomic context database.
Genomic interval146 072-146 758 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 072-146 758 ntGCF_019131145::NZ_JAHOMC010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131145::NZ_JAHOMC010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOMC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span146 072-146 758 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 072 nt146 758 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KSY53_RS00620GCF_019131145#KSY53_RS00620
RRNarLCurrent focus
146 072-146 758 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685965#BAD08_RS01255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1309950
Simplified PFAM architecture for RROC_1309950
PFAM domain coverage: 169 / 228 aa (74.1%)
1 aa228 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-122] | GerE[167-222]
- Domain count: 2
- Matched identifier: RROC_1309950
- Positioned domains: Response_reg 10-122 ; Response_reg 10-122 ; GerE 167-222 ; GerE 167-222
Cluster members and taxonomy
Representative gene: GCF_001685965#BAD08_RS01255
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 90 total members. Page 1 / 2.
GCF_001685965#BAD08_RS01255 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_019131145
AssemblyASM1913114v1 · Contighaploid
Genome composition2 206 142 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key