1 HisKA#1
140-203 aa · 64 aa · 17.7% of protein
Raw token
HisKA:140:0.0000000000236:203:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KSY51_RS08830
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_019131135
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_019131135#KSY51_RS08830Stable P2CS identifier used across views.
GenomeGCF_019131135Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 361 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
253-360 aa · 108 aa · 29.9% of protein
Raw token
HATPase_c:253:9.1e-22:360:109:109- Raw architecture: HisKA:140:0.0000000000236:203:64:64#HATPase_c:253:9.1e-22:360:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_019131135::NZ_JAHOLT010000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31869-33639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKSY51_08875RefSeq proteinWP_008791282.1
Context group ID
GCF_019131135::NZ_JAHOLT010000011.1::G00002Context members
KSY51_RS08830KSY51_RS08835
Partner locus tags
KSY51_RS08830KSY51_RS08835
Partner old locus tags
KSY51_08875KSY51_08880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008791282.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3AFD7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3AFD7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKSY51_RS08830Primary locus identifier stored in the genes table.
Old locus tagKSY51_08875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHOLT010000011.1Sequence record reported by the local genomic context database.
Genomic interval31 869-32 954 nt1 086 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 869-33 639 ntGCF_019131135::NZ_JAHOLT010000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_019131135::NZ_JAHOLT010000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHOLT010000011.1All displayed genes belong to this local TCS context.
Neighborhood span31 869-33 639 nt1 771 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 869 nt33 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KSY51_RS08830GCF_019131135#KSY51_RS08830
HKClassicCurrent focus
31 869-32 954 nt · Reverse (-)
KSY51_RS08835GCF_019131135#KSY51_RS08835
RROmpR
32 947-33 639 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS04690Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2740562
Simplified PFAM architecture for HKOC_2740562
PFAM domain coverage: 172 / 361 aa (47.6%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[140-203] | HATPase_c[253-360]
- Domain count: 2
- Matched identifier: HKOC_2740562
- Positioned domains: HisKA 140-203 ; HATPase_c 253-360
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS04690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_019131135
AssemblyASM1913113v1 · Contighaploid
Genome composition3 364 124 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 51 · HK 23 · RR 28CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key